PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099839.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 532aa    MW: 55693.4 Da    PI: 9.1925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099839.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-056385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_010099839.1 63 FICEICNKGFQRDQNLQLHRRGH 85
                    89*******************88 PP

2zf-C2H211.10.0012139161123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_010099839.1 139 WKCDKCSKKYAVQSDWKAHSKIC 161
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.99E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.4E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355210104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.99E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MATDLDNSST ASGEASVSSS GNQTAPSIPK STPKKKRNLP GMPDPDAEVI ALSPKALLAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPS CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AEESAKNQNN QPPNPPQDQV QAQNQTTGKL NSESEPKVQK KNSSSPPQPP  240
PPKSKEAPPS STSVQSGPSQ STGVISSSTL PIQTPAGLPE NPPRISEETT PEPGLNGSSN  300
SITSSSSNGS TSSSVFASLF APSTTSANLQ PPQSPAFTDL IRAMGPPDPP ADLAPSSSIE  360
PISLGLSTSH GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT NASLLRGLGI  420
MSSTSPSAQQ ENLQWPRRQV EPDSGSVAAG LGLGLPCDGG SGLKELMMGT PSMFGPKQTT  480
LDFLGLGMAA GGSPNGGLSA LITSIGGGLD VAAAAASFGG GEFSGKEIGR SS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099839.10.0Zinc finger protein MAGPIE
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLW9RLI20.0W9RLI2_9R
STRINGPOPTR_0007s12520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-142C2H2-like zinc finger protein